User contributions for Romano

16 April 2012

• 15:4515:45, 16 April 2012 diff hist 1,168 bytes Download and Installation →Compiler
• 15:4215:42, 16 April 2012 diff hist 1,031 bytes Download and Installation →Operative system
• 15:4215:42, 16 April 2012 diff hist 1,030 bytes Download and Installation →Requirements
• 15:4115:41, 16 April 2012 diff hist 6,776 bytes Pseudoknot formation →Option 3
• 15:4015:40, 16 April 2012 diff hist 6,775 bytes Pseudoknot formation No edit summary
• 15:3715:37, 16 April 2012 diff hist 683 bytes Download and Installation →Requirements
• 15:3615:36, 16 April 2012 diff hist 600 bytes Download and Installation New page: ==Requirements== oxDNA compilation has been thoroughly tested with gcc >= 4.1.x and icpc >= 10. oxDNA does not require any external library. If you ==Download== The source package can be...
• 15:3415:34, 16 April 2012 diff hist 6,751 bytes Pseudoknot formation No edit summary
• 15:2815:28, 16 April 2012 diff hist 6,723 bytes Pseudoknot formation New page: One of the features of the model implemented in oxDNA is that it has a three-dimensional structure, so that it automatically incorporates topological effects (see Flavio's paper). In this ...
• 15:2515:25, 16 April 2012 diff hist 90 bytes Category:Examples No edit summary
• 15:2015:20, 16 April 2012 diff hist 88 bytes Category:Examples No edit summary
• 12:3912:39, 16 April 2012 diff hist 981 bytes m Main Page No edit summary
• 12:3912:39, 16 April 2012 diff hist 982 bytes Main Page →oxDNA
• 12:3812:38, 16 April 2012 diff hist 983 bytes Main Page →Acknowledgments
• 12:3712:37, 16 April 2012 diff hist 929 bytes Publications No edit summary
• 12:3612:36, 16 April 2012 diff hist 722 bytes Publications No edit summary
• 12:3612:36, 16 April 2012 diff hist 710 bytes Publications No edit summary
• 12:3412:34, 16 April 2012 diff hist 694 bytes Publications No edit summary
• 12:3312:33, 16 April 2012 diff hist 482 bytes Publications New page: T.E. Ouldridge, A.A. Louis and J.P.K. Doye, J. Chem. Phys, 134, 085101 (2011) [http://link.aip.org/link/?JCP/134/085101 Structural, mechanical and thermodynamic properties of a coarse-grai...
• 12:3012:30, 16 April 2012 diff hist 988 bytes Main Page →oxDNA

15 April 2012

• 10:5910:59, 15 April 2012 diff hist empty File:Image.png uploaded a new version of "Image:Image.png" current

13 April 2012

• 20:5920:59, 13 April 2012 diff hist 7,498 bytes Documentation →Simulation options
• 20:5620:56, 13 April 2012 diff hist 7,430 bytes m Documentation →Simulation options
• 19:0619:06, 13 April 2012 diff hist 7,429 bytes Documentation →Output files
• 19:0519:05, 13 April 2012 diff hist 7,583 bytes Documentation →Output files
• 16:4516:45, 13 April 2012 diff hist 5,089 bytes m Hairpin formation →Results
• 16:4516:45, 13 April 2012 diff hist 5,099 bytes m Hairpin formation →Introduction
• 16:4416:44, 13 April 2012 diff hist 5,097 bytes m Hairpin formation No edit summary
• 16:4116:41, 13 April 2012 diff hist 4,207 bytes Hairpin formation No edit summary
• 16:3916:39, 13 April 2012 diff hist 4,192 bytes Hairpin formation →Introduction
• 16:3816:38, 13 April 2012 diff hist 4,178 bytes Hairpin formation →Introduction
• 16:3716:37, 13 April 2012 diff hist empty File:Histo MD.png No edit summary
• 16:3616:36, 13 April 2012 diff hist 4,181 bytes m Hairpin formation No edit summary
• 16:3216:32, 13 April 2012 diff hist 967 bytes Main Page →oxDNA
• 16:2516:25, 13 April 2012 diff hist 67 bytes Category:Examples New page: Here we put examples on how to use the code to study simple systems
• 16:2316:23, 13 April 2012 diff hist 40 bytes DsDNA persistence length No edit summary
• 16:2316:23, 13 April 2012 diff hist 18 bytes DsDNA persistence length New page: = Petr's example =
• 16:2116:21, 13 April 2012 diff hist 2,981 bytes Hairpin formation No edit summary
• 16:2116:21, 13 April 2012 diff hist 31 bytes Examples Examples moved to Hairpin formation current
• 16:2116:21, 13 April 2012 diff hist 2,959 bytes m Hairpin formation Examples moved to Hairpin formation
• 16:0716:07, 13 April 2012 diff hist 2,959 bytes Hairpin formation New page: = Hairpin formation = == Introduction == In this example, you will simulate a single strand of length 18 and sequence <tt>GCGTTGCTTCTCCAACGC</tt> at 334 K (~61 C) in three different ways:...
• 16:0616:06, 13 April 2012 diff hist 7,373 bytes Documentation No edit summary
• 16:0416:04, 13 April 2012 diff hist 7,409 bytes Documentation →Compilation options
• 15:5715:57, 13 April 2012 diff hist 7,419 bytes Documentation →Molecular dynamics simulations options
• 15:5615:56, 13 April 2012 diff hist 7,423 bytes Documentation →Input/output
• 15:5615:56, 13 April 2012 diff hist 7,423 bytes Documentation →Input/output
• 15:5115:51, 13 April 2012 diff hist 7,463 bytes Documentation →Simulation options
• 15:4815:48, 13 April 2012 diff hist 7,478 bytes Documentation →Simulation options
• 15:4815:48, 13 April 2012 diff hist 7,508 bytes Documentation →Simulation options
• 15:4715:47, 13 April 2012 diff hist 7,514 bytes Documentation →Simulation options