Gallery of studied systems

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This page shows the systems studied with oxDNA or oxRNA model:

DNA systems

DNA nanotweezers
Burnt bridges motor
Two-footed DNA walker
Single stranded pulling
Kissing hairpins (studied with the average model and the sequence-dependent model)
Loop sequence effects on melting temperatures of hairpins
Heterogeneous stacking transition in single strands
Duplex fraying
Biophysics of strand displacement
Overstretching
DNA Cruciforms
Hybridization kinetics
Plectonemes

RNA systems

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