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oxDNA

oxDNA is a simulation code that implements the coarse-grained DNA model introduced by T. E. Ouldridge, J. P. K. Doye and A. A. Louis. {{#if:|}}{{#if:|}}. The code implements Monte Carlo and Brownian Dynamics and can be used as a basis to numerically study DNA systems. The developers are F. Romano, P. Šulc and T. E. Ouldridge in the Doye and Louis groups at the University of Oxford and L. Rovigatti in the Sciortino group in Rome.

• Download and Installation

• Model introduction

• Documentation

• Examples

• Screenshots

• Publications

Acknowledgments

We thank our co-workers C. Matek, B. Snodin and W. Smith for having contributed bits of code.