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# L. Rovigatti, P. Šulc, I. Reguly, F. Romano, ''arXiv'', (2014)
# L. Rovigatti, P. Šulc, I. Reguly, F. Romano, ''arXiv'', (2014)
#:[http://arxiv.org/abs/1401.4350 A comparison between parallelization approaches in molecular dynamics simulations on GPUs]
#:[http://arxiv.org/abs/1401.4350 A comparison between parallelization approaches in molecular dynamics simulations on GPUs]
#P. Šulc, F. Romano, T. E. Ouldridge,  J. P. K. Doye, A. A. Louis, 'arxiv'' (2014)
#:[http://arxiv.org/abs/1403.4180 A nucleotide-level coarse-grained model of RNA] ([http://arxiv.org/abs/1403.4180 arXiv])

Revision as of 00:51, 18 March 2014

  1. T. E. Ouldridge, A. A. Louis and J. P. K. Doye, Phys. Rev. Lett. 104, 178101 (2010)
    DNA Nanotweezers Studied with a Coarse-Grained Model of DNA (arXiv)
  2. T. E. Ouldridge, A. A. Louis and J. P. K. Doye, J. Chem. Phys, 134, 085101 (2011)
    Structural, mechanical and thermodynamic properties of a coarse-grained DNA model (arXiv)
  3. T. E. Ouldridge, D.Phil. Thesis, University of Oxford, 2011.
    Coarse-grained modelling of DNA and DNA self-assembly
  4. F. Romano, A. Hudson, J. P. K. Doye, T. E. Ouldridge, A. A. Louis, J. Chem. Phys. 136, 215102 (2012)
    The effect of topology on the structure and free energy landscape of DNA kissing complexes (arXiv)
  5. C. De Michele, L. Rovigatti, T. Bellini, F. Sciortino, Soft Matter 8, 8388 (2012)
    Self-assembly of short DNA duplexes: from a coarse-grained model to experiments through a theoretical link (arXiv)
  6. C. Matek, T. E. Ouldridge, A. Levy, J. P. K. Doye, A. A. Louis, J. Phys. Chem. B (2012)
    DNA cruciform arms nucleate through a correlated but non-synchronous cooperative mechanism (arXiv)
  7. P. Šulc, F. Romano, T. E. Ouldridge, L. Rovigatti, J. P. K. Doye, A. A. Louis, J. Chem. Phys. 137, 135101 (2012)
    Sequence-dependent thermodynamics of a coarse-grained DNA model (arxiv)
  8. F. Romano, D. Chakraborty, J. P. K. Doye, T. E. Ouldridge, A. A. Louis, J. Chem. Phys. 138, 085101 (2013)
    Coarse-grained simulations of DNA overstretching (arXiv)
  9. P. Šulc, T. E. Ouldridge, F. Romano, J. P. K. Doye, A. A. Louis, Natural Computing (2013)
    Simulating a burnt-bridges DNA motor with a coarse-grained DNA model (arXiv)
  10. T. E. Ouldridge, R. L. Hoare, A. A. Louis, J. P. K. Doye, J. Bath, A. J. Turberfield, ACS Nano (2013)
    Optimizing DNA nanotechnology through coarse-grained modelling: a two-footed DNA walker
  11. T. E. Ouldridge, P. Šulc, F. Romano, J. P. K. Doye, A. A. Louis, Nucleic Acids Res., (2013)
    DNA hybridization kinetics: zippering, internal displacement and sequence dependence (arXiv)
  12. J.P.K. Doye, T. E. Ouldridge, A. A. Louis, F. Romano, P. Šulc, C. Matek, B.E.K. Snodin, L. Rovigatti, J. S. Schreck, R.M. Harrison, W.P.J. Smith, Phys. Chem. Chem. Phys (2013)
    Coarse-graining DNA for simulations of DNA nanotechnology ([1])
  13. N. Srinivas, T. E. Ouldridge, P. Šulc, J. M. Schaeffer, B. Yurke, A. A. Louis, J. P. K. Doye, E. Winfree, Nucleic Acids Res., (2013)
    On the biophysics and kinetics of toehold-mediated DNA strand displacement
  14. L. Rovigatti, F. Bomboi, F. Sciortino, arXiv (2014)
    Accurate phase diagram of tetravalent DNA nanostars
  15. L. Rovigatti, P. Šulc, I. Reguly, F. Romano, arXiv, (2014)
    A comparison between parallelization approaches in molecular dynamics simulations on GPUs
  16. P. Šulc, F. Romano, T. E. Ouldridge, J. P. K. Doye, A. A. Louis, 'arxiv (2014)
    A nucleotide-level coarse-grained model of RNA (arXiv)
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