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oxDNA

oxDNA is a simulation code that implements the coarse-grained DNA model introduced by T. E. Ouldridge, J. P. K. Doye and A. A. Louis. {{#if:|}}{{#if:|}}. The code implements Monte Carlo and Brownian Dynamics and can be used as a basis to numerically study DNA systems. The developers are F. Romano, P. Sulc and T. E. Ouldridge in the Doye and Louis groups at the University of Oxford and L. Rovigatti in the Sciortino group in Rome.

• Download and Installation

• Model introduction

• Documentation

• Examples

• Screenshots

Acknowledgments

We thank our co-workers C. Matek, B. Snodin, W. Smith, etc... for having contributed bits of code.