External Resources: Difference between revisions

Revision as of 13:49, 10 December 2018

Here we provide a list of publicly available external resources that have been developed to help use oxDNA.

The oxDNA and oxDNA2 models have been implemented in LAMMPS in the USER-CGDNA package. This was developed by Oliver Henrich (with the help of Tom E. Ouldridge, F. Romano and L. Rovigatti). The package documentation can be found here. The code comes with any regular download from the central LAMMPS repository, and it is also available here.

The tacocDNA website offers converters between oxDNA and different formats: http://tacoxdna.sissa.it/

If you have any resources that you want added do let us know.

Revision as of 08:09, 10 December 2018 (view source) Johansson (talk \| contribs) (Added link to tacoxDNA) ← Older edit		Revision as of 13:49, 10 December 2018 (view source) Doye (talk \| contribs) No edit summary Newer edit →
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	Here we provide a list of external resources that have been developed to help use oxDNA ~~as they become publicly available~~.		Here we provide a list of publicly available external resources that have been developed to help use oxDNA.

	* The oxDNA and oxDNA2 models have been implemented in [http://lammps.sandia.gov/ LAMMPS] in the USER-CGDNA package. This was developed by [http://www.oliverhenrich.com/ Oliver Henrich] (with the help of Tom E. Ouldridge, F. Romano and L. Rovigatti). The package documentation can be found [http://lammps.sandia.gov/doc/Section_packages.html#user-cgdna here]. The code comes with any regular download from the central LAMMPS repository, and it is also available [https://github.com/ohenrich/cgdna here].		* The oxDNA and oxDNA2 models have been implemented in [http://lammps.sandia.gov/ LAMMPS] in the USER-CGDNA package. This was developed by [http://www.oliverhenrich.com/ Oliver Henrich] (with the help of Tom E. Ouldridge, F. Romano and L. Rovigatti). The package documentation can be found [http://lammps.sandia.gov/doc/Section_packages.html#user-cgdna here]. The code comes with any regular download from the central LAMMPS repository, and it is also available [https://github.com/ohenrich/cgdna here].