Gallery of studied systems: Difference between revisions
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The systems studied with the oxDNA or oxRNA model with the links to the respective papers provided below: | |||
==DNA systems== | ==DNA systems== | ||
<gallery mode="packed | <gallery mode="packed" widths=250px heights=180px > | ||
Image:tweezers.png|''[http://prl.aps.org/abstract/PRL/v104/i17/e178101 DNA nanotweezers]'' | Image:tweezers.png|''[http://prl.aps.org/abstract/PRL/v104/i17/e178101 DNA nanotweezers]'' | ||
Image:burntbridges.png|''[http://link.springer.com/article/10.1007%2Fs11047-013-9391-8 Burnt bridges motor]'' | Image:burntbridges.png|''[http://link.springer.com/article/10.1007%2Fs11047-013-9391-8 Burnt bridges motor]'' | ||
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Image:kissing_hairpins.png|''Kissing hairpins (studied with [http://jcp.aip.org/resource/1/jcpsa6/v136/i21/p215102_s1 the average model] and [http://jcp.aip.org/resource/1/jcpsa6/v137/i13/p135101_s1 the sequence-dependent model])'' | Image:kissing_hairpins.png|''Kissing hairpins (studied with [http://jcp.aip.org/resource/1/jcpsa6/v136/i21/p215102_s1 the average model] and [http://jcp.aip.org/resource/1/jcpsa6/v137/i13/p135101_s1 the sequence-dependent model])'' | ||
Image:longhpin.png|''[http://jcp.aip.org/resource/1/jcpsa6/v137/i13/p135101_s1 Loop sequence effects on melting temperatures of hairpins]'' | Image:longhpin.png|''[http://jcp.aip.org/resource/1/jcpsa6/v137/i13/p135101_s1 Loop sequence effects on melting temperatures of hairpins]'' | ||
Image:sstack.png|''[http://jcp.aip.org/resource/1/jcpsa6/v137/i13/p135101_s1 Heterogeneous stacking transition in single strands]'' | |||
Image:fray.png|''[http://jcp.aip.org/resource/1/jcpsa6/v137/i13/p135101_s1 Duplex fraying]'' | |||
Image:strand_displace.png|''[http://nar.oxfordjournals.org/content/early/2013/09/07/nar.gkt801.full?sid=762d341b-b72f-4a09-9235-20ad3ef8aeed Biophysics of strand displacement]'' | Image:strand_displace.png|''[http://nar.oxfordjournals.org/content/early/2013/09/07/nar.gkt801.full?sid=762d341b-b72f-4a09-9235-20ad3ef8aeed Biophysics of strand displacement]'' | ||
Image:over_stretch.png|''[http://jcp.aip.org/resource/1/jcpsa6/v138/i8/p085101_s1 Overstretching]'' | Image:over_stretch.png|''[http://jcp.aip.org/resource/1/jcpsa6/v138/i8/p085101_s1 Overstretching]'' | ||
Image:cruci.png|''[http://pubs.acs.org/doi/abs/10.1021/jp3080755 DNA Cruciforms]'' | Image:cruci.png|''[http://pubs.acs.org/doi/abs/10.1021/jp3080755 DNA Cruciforms]'' | ||
Image:hybridization.png|''[http://nar.oxfordjournals.org/content/early/2013/08/08/nar.gkt687 Hybridization kinetics]'' | Image:hybridization.png|''[http://nar.oxfordjournals.org/content/early/2013/08/08/nar.gkt687 Hybridization kinetics]'' | ||
Image: | Image:plecto.png|''[http://arxiv.org/abs/1404.2869 Plectonemes]'' | ||
Image:colorato.png|''[http://pubs.acs.org/doi/abs/10.1021/nn501138w Gels made of tetravalent DNA nanostars]'' | |||
Image:DNA_nematic.png|''[http://pubs.rsc.org/en/content/articlehtml/2012/sm/c2sm25845e Nematic phases formed by short DNA duplexes]'' | |||
</gallery> | |||
==RNA systems== | |||
<gallery mode="packed" widths=250px heights=180px > | |||
Image:pseudo.png|''[http://arxiv.org/abs/1403.4180 Pseudoknot folding thermodynamics]'' | |||
Image:khp.png|''[http://arxiv.org/abs/1403.4180 Kissing complex]'' | |||
Image:nanoring.png|''[http://arxiv.org/abs/1403.4180 Nanoring]'' | |||
Image:unzip.png|''[http://arxiv.org/abs/1403.4180 Hairpin unzipping]'' | |||
Image:RNA_plectoneme.png|''[http://scitation.aip.org/content/aip/journal/jcp/143/24/10.1063/1.4933066 Plectonemes]'' | |||
</gallery> | </gallery> | ||
Latest revision as of 19:09, 17 December 2015
The systems studied with the oxDNA or oxRNA model with the links to the respective papers provided below:
DNA systems
Kissing hairpins (studied with the average model and the sequence-dependent model)
